Impact of component number on topographies and time courses

[nbara]

Impact of component number on topographies and time courses

[nbara]

Hi @OleBialas

This is a visual representation of the steps performed by DSS (from de Cheveigné & Parra, 2014) :

You can see there are 2 PCA steps involved. nkeep1 specifies the number of components to keep in these two PCAs, not in the overall DSS algorithm.

One you have truncated your data after the first PCA, the second PCA will naturally not look the same.

I would not suggest you change the nkeep1 parameter unless you have good reason to do so (for example if you have many many channels with lots of redundancy). In your case I would probably stick with nkeep1=None which keeps all (non-negligible) components.

[OleBialas]

I am aware of the paper - I actually tried to implement the algorithm myself until I found this nice package :)

I thought the keep parameter refers to the components kept after the final rotation (since the paper does not mention rejecting components after the first PCA), which can then be used for a second rotation to enhance the difference between conditions.

If the rejection happens after the first PCA it's perfectly clear why the results look different - thank you!