Comments (3)
Thank you for your report, user @tangwei825 !
We opened internal investigation for this data issue. One of our curators will have a look at this in a timely manner.
from pgap.
Thank you for your input. We have modified the data we use to determine the structural annotation of this protein and created a new protein family model for the AgrC protein which should correct the functional annotation. These changes will be in the next release of PGAP which should be happening shortly.
Thank you for this information.
from pgap.
Thank you guys for your response and updating the database! Looking forward to the new release.
from pgap.
Related Issues (20)
- [BUG] A YAML file argument cannot be used in combination with either the -s/--organism or -g/--genome arguments HOT 8
- [BUG] -c flag not received: /mnt/shared/scratch/theaven/uncompressed/hogenhout/pgap-s7 HOT 1
- [BUG] Fail in GenBank output file HOT 9
- product protein name issues HOT 3
- [BUG] Final process status is permanentFail HOT 1
- [Error] Docker exited with rc = 1 HOT 3
- [Error] Docker exited with rc =1 HOT 2
- Get_Proteins_app issues HOT 14
- Error: Final process status is permanentFail HOT 7
- Error: Final process status is permanentFail HOT 17
- source code for gc_get_molecules HOT 2
- PGAP for multiple users HOT 2
- [BUG] Genus species requirement HOT 8
- [BUG] PGAP fails on test genome when PGAP_INPUT_DIR set to other than default HOT 4
- Species_Requirement_option HOT 1
- [BUG] Failing to run some sequences HOT 2
- [BUG] FATAL: "cwltool": executable file not found in $PATH in 2024-04-27.build7426 HOT 4
- [BUG] GFF3 output file does not contain sequence-region name HOT 3
- [BUG] PGAP failed, docker exited with rc = 1 HOT 11
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