Comments (3)
azat-badretdin
commented on August 20, 2024
Thank you for your report, user @tangwei825 !
We opened internal investigation for this data issue. One of our curators will have a look at this in a timely manner.
from pgap.
koneill54
commented on August 20, 2024
Thank you for your input. We have modified the data we use to determine the structural annotation of this protein and created a new protein family model for the AgrC protein which should correct the functional annotation. These changes will be in the next release of PGAP which should be happening shortly.
Thank you for this information.
from pgap.
tangwei825
commented on August 20, 2024
Thank you guys for your response and updating the database! Looking forward to the new release.
from pgap.
Related Issues (20)
- [BUG] A YAML file argument cannot be used in combination with either the -s/--organism or -g/--genome arguments HOT 8
- [BUG] -c flag not received: /mnt/shared/scratch/theaven/uncompressed/hogenhout/pgap-s7 HOT 1
- [BUG] Fail in GenBank output file HOT 9
- product protein name issues HOT 3
- [BUG] Final process status is permanentFail HOT 1
- [Error] Docker exited with rc = 1 HOT 3
- [Error] Docker exited with rc =1 HOT 2
- Get_Proteins_app issues HOT 14
- Error: Final process status is permanentFail HOT 7
- Error: Final process status is permanentFail HOT 17
- source code for gc_get_molecules HOT 2
- PGAP for multiple users HOT 2
- [BUG] Genus species requirement HOT 8
- [BUG] PGAP fails on test genome when PGAP_INPUT_DIR set to other than default HOT 4
- Species_Requirement_option HOT 1
- [BUG] Failing to run some sequences HOT 2
- [BUG] FATAL: "cwltool": executable file not found in $PATH in 2024-04-27.build7426 HOT 4
- [BUG] GFF3 output file does not contain sequence-region name HOT 3
- [BUG] PGAP failed, docker exited with rc = 1 HOT 11
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google ❤️ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.
from pgap.