Comments (1)
This is an extremely important feature if you use docker to run TPMCalculator. All of the files created by it will be in the root directory, not the mounted volume, so as soon as the container ends, all of the files are gone.
I got around it by running a script of TPMCalculator where /mnt/ is the internal mount point:
cd /mnt/
TPMCalculator -g /mnt/gencode44/chr21.gtf -b /mnt/chr21.bam
from tpmcalculator.
Related Issues (20)
- Gene number in input GTF differs from the TPMCalculator output HOT 3
- symbol lookup error HOT 9
- Sets the name of the output HOT 2
- For the paired end reads, is it recommended to use option -p or should i go with default without it? HOT 1
- Output file description HOT 2
- /usr/bin/ld: cannot find -lbamtools HOT 2
- *_genes.out duplicate genes HOT 3
- Compilation error: collect2: error: ld returned 1 exit status HOT 2
- Is the read counting strand-specific? HOT 2
- Key ID for gene name was not found on GTF line HOT 3
- No TPM values, no reads processed HOT 9
- Chromosome with name: ENST.... does not exist HOT 10
- Output files desctiption HOT 1
- Installation without docker HOT 1
- Meaning of "UniqueReads" in genes.out file? HOT 2
- Possible to use gff3 in TPMCalculator v 0.4? HOT 1
- Build problems on Ubuntu and MacOSX HOT 1
- Help me please HOT 1
- After installing version 0.0.4, -version still prints 0.0.3
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from tpmcalculator.