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Hey, I'm Nicole! ๐Ÿ‘ฉ๐Ÿปโ€๐Ÿ’ป (she/her)

  • ๐Ÿ‘ฉ๐Ÿปโ€๐ŸŽ“ Last year I completed my PhD in Bioinformatics and Computational Biology (BCB) at the University of North Carolina at Chapel Hill.
  • ๐Ÿ–ฅ I work in the Phanstiel Lab developing tools and workflows to visualize and analyze genomic data, and I am currently applying these tools to perform response expression quantitative trait locus (eQTL) mapping to investigate the genomic loci associated with osteoarthritis.
  • ๐Ÿ“ˆ I love working with data of any kind, making beautiful data visualizations, and solving code-based problems!

My Skills

You might know me best as the lead author and maintainer of plotgardener...

plotgardener is an R/Bioconductor genomic data visualization package that allows users to build coordinate-based, publication-quality multi-panel figures programmatically. Check out the...

  • ๐Ÿ’พ Code Repo
  • ๐Ÿ“œ Publication
  • ๐Ÿ“– Documentation
  • Back during development under a different name, I gave a talk on the principles of the software at rstudio::global(2021) that you can check out here!
  • I am always looking to improve and expand plotgardener, so be sure to leave any suggestions in the issues.

Other interests

  • ๐Ÿถ dogs
  • ๐Ÿฆ’ giraffes
  • ๐Ÿงถ knitting and crocheting (currently making some socks from The Sock Project)
  • โ›ธ figure skating
  • ๐Ÿ“š reading (current read:
)
  • ๐ŸŽฎ videogames (currently playing Super Mario Wonder)


spotify-github-profile

Nicole Kramer's Projects

bagpipes icon bagpipes

New and improved snakemake pipelines for RNA-seq, ChIP-seq, and ATAC-seq processing for the Phanstiel Lab

cqtl_ai icon cqtl_ai

Processing used for AI of CQTL project

cqtl_de icon cqtl_de

Processing used for DE of CQTL project

cqtl_eqtl icon cqtl_eqtl

Processing used for eQTL mapping of the CQTL project.

datasci611 icon datasci611

Materials for Principles of Data Science BIOS 611

ggvenn icon ggvenn

Venn Diagram by ggplot2, with really easy-to-use API.

hic_tools icon hic_tools

A collection of tools for Hi-C data analysis

juicer icon juicer

A One-Click System for Analyzing Loop-Resolution Hi-C Experiments

misc icon misc

Miscellaneous scripts and notes

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