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anyway_projects

Experimental projects using ANYWAY

butter

butter: Bowtie UTilizing iTerative placEment of Repetitive small rnas

calc_md5_checksum

Calculate the MD5 hash (checksum) for files in a list of directories.

calcium-imaging-neuron-detection

This code and notebooks describe our attempts to analyze calcium imaging videos and marking the neurons according to their level of fluorescence

chisq_test_wrapper

A friendly, automated chi-square test function which takes care of post-hoc tests and multiple comparisons.

count_gaps_in_fasta

A script which counts the gaps in FASTA DNA sequences and reports their proportions in a CSV file

covid-19-timeseires

Timeseries analysis of covid-19 cases

csharp-gradebookapplication

Project to add features to an existing C Sharp Grade Book Application.

datahaprockets

The rocket project from DataHack 2017 - all cool things done by the DataHack team

datasciencecoursera

A coursera data science course repo

datasharing

The Leek group guide to data sharing

dead_sea_scrolls

Contains the code used to process and analyze the samples of the DSS project

deeplearning-biology

A list of deep learning implementations in biology

fastai

The fast.ai deep learning library, lessons, and tutorials (forked as backup)

feature-selection-utils

Feature Selection utils implemented for multivariate timeseries-data

genome-annotation-tools

An assembly of scripts to parse, edit and curate gene annotations, when uploading files to NCBI

hearingappx

The best hearing app in the world.

illumina_snps_to_plink

A repository of scripts to convert SNP files which are a product of GenomeStudio or other files in to PLINK format, and to convert files from PED format into FASTA

keras

Deep Learning for humans

motils

A python package containing local utilities for simplifying every day coding and scripting

mp_wrapper

A simple wrapper for python multiprocessing functions

neuhofmo.github.io

GitHub pages blog

pairwise_tblastx

This project performs pairwise tblastx on a folder full fasta files, in order to find potential homologues.

pysge

Python API for sending and checking jobs on linux with Sun Grid Engine (SGE)

recblast

The local version of the RecBlast

recblast-cloud

Scripts for installing RecBlast stand alone on cloud instances

stacked_barplot_for_pandas_df

A matplotlib-based function for easily creating bar plots from DataFrame objects.

test-repo

the_weather_channel

The dumbos hack the weather