Comments (4)
Deliverables
Functions (one for each dataset) that
- pulls graph data from each of the sites listed that have .xlsx format (WormWiring, etc.)
- pulls graph metadata from each of the sites listed that have .xlsx format (WormWiring, etc.)
- saves data to format specified in #1
from connectocross.
note: it may not be possible to do this generally for all xlsx if that makes sense. i.e. some paper may store in xlsx in one way, another might do it differently. just pointing out that this will likely be dataset specific
from connectocross.
note: it may not be possible to do this generally for all xlsx if that makes sense. i.e. some paper may store in xlsx in one way, another might do it differently. just pointing out that this will likely be dataset specific
Ok, I'll just to see how it goes then.
from connectocross.
need to spec out what kind of metadata you will have. also which connectomes specifically.
from connectocross.
Related Issues (20)
- write data pulling functions for the connectomes of interest
- write dataset fetching functions, include as lightweight package HOT 1
- (decide if we need a) lightweight graph + metadata object HOT 3
- talk to connectome neurobiologists HOT 1
- write data pulling functions for the connectomes of interest - CATMAID HOT 2
- write data pulling functions for the connectomes of interest - NeuPrint HOT 4
- make gallery with graph layouts for each connectome HOT 2
- figure out how to extract contact graphs from CATMAID
- make a table/markdown/something of edge/node/graph attributes for each connectome HOT 2
- fitting L/R SBMs, testing different L/R SBM hypotheses
- L/R homotypic affinity?
- run modularity HOT 5
- Write data pulling function for Cionia intestinalis HOT 1
- fit a priori SBMs to the connectomes HOT 3
- graph matching stuff
- simple statistics
- adjacency matrix plots HOT 1
- Consistent styling HOT 9
- Add list of available connectomes with references to a page in the documentation
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from connectocross.