Comments (3)
moold
commented on May 23, 2024
Yes, you can remove it, but removing it means minimap2 need more memory to do alignment, our test shown setting -I 3G will make minimap2 use about 30-40 Gb memory for a single task with 8 threads.
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moold
commented on May 23, 2024
If you add additional minimap2 options, the command results in two "-I" flags. This is no problem, and the later will overwrite the first one.
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iggyB
commented on May 23, 2024
Alright! Sounds good.
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Related Issues (20)
- Only one sample or multiple samples can be used in nextdenovo? HOT 1
- Non-zero exit status 134 HOT 2
- [ERROR] failed to find seq file type or empty file after ctg_graph HOT 4
- Assembly is running around a month and going strong - or is it stalled? HOT 15
- about the ParallelTask for the nextdenovo HOT 1
- NextDenovo Parent Job Failed, No Error, Subtasks still running HOT 1
- Low performance with highly repeated regions HOT 1
- non-zero exit status 137, error info: . - assembly still finishes though HOT 1
- Unable to run test data on macOS HOT 4
- Samtools sort out-of-memory HOT 1
- Segmentation fault (core dumped) at 03.ctg_graph/01.ctg_graph.sh.work/ctg_graph0 HOT 1
- Can you run nextDenovo without a config file? HOT 1
- TypeError: unsupported operand type(s) HOT 2
- long time for assemling genome HOT 6
- Can I assemble a gap free genome using only regular ONT data? HOT 1
- telomeres getting lost HOT 6
- [4501 ERROR] 2023-06-13 22:29:40 the input data is insufficient for an assembly. HOT 3
- No assembly file after running NextDenovo HOT 1
- sort_align step erro HOT 1
- Does NEXTDENOVO filter the contig before output? HOT 2
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