Comments (5)
Did you delete some intermediate result files? Did you successfully run the test data?
from nextdenovo.
Thanks for your kindly reploy,
I don't run test data. When nextDenovo first releaed without assembly model,I use nextdenovo to do reads cerrection, and it works good. Now you release the assembly part, I download the whole package and want to use nextgraph to do contiger, and I got this error. I don't delete some intermediate result files manualy,but I chose deltmp = yes
in run.ctg
from nextdenovo.
The currently release is not compatible with the old version. So maybe you need rerun all pipeline.
from nextdenovo.
Thanks a lot!
I will try again.
from nextdenovo.
It's the compatibility problem. I deleted the reads carrection results genereted by the first released package and rerun the pipeline. Now it's move to CNS step. Thanks a lot.
from nextdenovo.
Related Issues (20)
- Samtools sort out-of-memory HOT 1
- Segmentation fault (core dumped) at 03.ctg_graph/01.ctg_graph.sh.work/ctg_graph0 HOT 1
- Can you run nextDenovo without a config file? HOT 1
- TypeError: unsupported operand type(s) HOT 2
- long time for assemling genome HOT 6
- Can I assemble a gap free genome using only regular ONT data? HOT 1
- telomeres getting lost HOT 6
- [4501 ERROR] 2023-06-13 22:29:40 the input data is insufficient for an assembly. HOT 3
- No assembly file after running NextDenovo HOT 1
- sort_align step erro HOT 1
- Does NEXTDENOVO filter the contig before output? HOT 2
- Error: db_stat failed ? HOT 1
- ERROR:the input data is insufficient for an assembly HOT 3
- Question about error rate for correction HOT 1
- ctg_align failed HOT 4
- When run nextdenovo with test_data failed HOT 1
- hello , i used the nextdenovo to assemble the ultra large size genome of 23g, the fq only 270g, just want to assemble the grapgh HOT 7
- How to improve the N50 and reduce contigs numbers? HOT 7
- Test won't run HOT 1
- For low base quality of sequences HOT 1
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