Comments (4)
moold
commented on May 25, 2024
Hi, thank you for your suggestion. Currently, I have no plan to move it to Python3, since the core code is implemented with C and Python is used as a "glue" language.
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colindaven
commented on May 25, 2024
Thanks. Bit worried about how python2 programs are going to be supported or function at all after 2020 on our Ubuntu 1604 cluster. Will upgrade in summer 2020 to the next LTS
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moold
commented on May 25, 2024
This may be a questions for others as well and I will re-consider your suggestions. Thanks.
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chunlinxiao
commented on May 25, 2024
our systems no longer support python2 - hopefully you can move this tool to python3 sooner.
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Related Issues (20)
- Can you run nextDenovo without a config file? HOT 1
- TypeError: unsupported operand type(s) HOT 2
- long time for assemling genome HOT 6
- Can I assemble a gap free genome using only regular ONT data? HOT 1
- telomeres getting lost HOT 6
- [4501 ERROR] 2023-06-13 22:29:40 the input data is insufficient for an assembly. HOT 3
- No assembly file after running NextDenovo HOT 1
- sort_align step erro HOT 1
- Does NEXTDENOVO filter the contig before output? HOT 2
- Error: db_stat failed ? HOT 1
- ERROR：the input data is insufficient for an assembly HOT 3
- Question about error rate for correction HOT 1
- ctg_align failed HOT 4
- When run nextdenovo with test_data failed HOT 1
- hello , i used the nextdenovo to assemble the ultra large size genome of 23g, the fq only 270g, just want to assemble the grapgh HOT 7
- How to improve the N50 and reduce contigs numbers? HOT 7
- Test won't run HOT 1
- For low base quality of sequences HOT 1
- Timing out on minimap-nd tasks HOT 4
- I want to correct ONT with HiFi data HOT 1
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