No Space left on device error

[Shashankti]

No Space left on device error

[Shashankti]

Fixed the issue by providing a custom config file as specified here.

singularity {
  enabled = true
  autoMounts = true
  runOptions = '-B /scratch1/users/shashank.tiwari/tmp/'
}

env {
  TMPDIR="/scratch1/users/shashank.tiwari/tmp/"
}

The issue was due to not using quotes when defining $TMPDIR. Thank you to the nf-core slack channel for the help

[fperezcobos]

Hi! I'm having exactly the same problem as Shashankti, but I'm running nextflow with the -profile docker option. I tried to run nextflox with a config file just including:

env {
TMPDIR = "/path/to/tmp/"
}

but it didn't work. I suppose I have to set some docker variables as well, but I'm not an expert and I don't know how to do it.

Can someone help me to fix the problem please? Thank you very much!

[Shashankti]

Were you able to fix the issue @fperezcobos ? You can try running with singularity or change the options for the docker profile, similar to what I had to do for the singularity profile