Comments (1)
Hi @jonasscheid, thanks for the suggestion. As we discussed earlier this would definitely make sense in certain scenarios. However, I would definitely want to keep both options at that point.
I have to think about this a bit more but I think there could be (rare) cases where splitting by the number of variants might alter the results when you have multiple variants that fall on the same transcript.
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Related Issues (20)
- No attribute 'MIN_DP' HOT 1
- Splitting a zipped vcf.gz file
- KeyError: 'Transcript ID' HOT 2
- Extend binding threshold with rank metric
- Add support for VEP annotated files
- Add Manta support for structural variant prediction HOT 2
- Issue with the process: EXTERNAL_TOOLS_IMPORT HOT 3
- Use nf-core modules
- Version 2.2.0 does not produce any predictions anymore for netmhcpan class 1 HOT 3
- Proteome CLI flags of epaa and nextflow differ HOT 2
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- Add mhcnuggets module
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- variant details not shown in epitope prediction result tsv when using VEP as annotation tool HOT 2
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