Related Issues (20)
- Update the URL for --genomad_db in docs HOT 1
- Pipeline fails with mag_depth script error when bins are empty HOT 2
- GTDBTK_CLASSIFYWF process does not put the summary.tsv file in the output directory HOT 8
- MAG_DEPTHS_PLOT fails if only a single bin is produced HOT 3
- Update metaspades to 4.0.0 HOT 1
- GTDBtk is being run on only one (of several) samples, even when running with the option --binning_map_mode own HOT 15
- email function is not working HOT 1
- Cannot get property 'fasta' on null object HOT 3
- creating a custom config file for slurm cluster? HOT 1
- GUNC-GTDB overwriting output files for bins HOT 1
- Mismatch between sample IDs and assembly IDs not being caught with assembly input HOT 2
- Option to skip DasTool unbinned contigs
- Consider CarpeDeam for (ancient DNA) damage aware assembler
- Failed to create Conda environment in the test run HOT 3
- Add (meta)Flye for long-read only assembly
- Add Porechop_ABI as alternative to Porechop
- Add nanoq as alternative for long-read filtering
- Consider metaMDBG as another long-read assembler
- convert_depths for co-assembly taking only average depth and not sample wise read depths for maxbin2 binning with solution HOT 2
- `GTDBTK_CLASSIFYWF` does not use `params.gtdbtk_pplacer_cpus` HOT 4
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