Related Issues (20)
- nf-test Github actions decompress automatically tar.gz outputs when they should not HOT 2
- new module: TIRLEARNER
- [FEATURE] allow skipping freyja boot subworkflow
- new module: helitronscanner/scanhead
- [FEATURE] Report primary alignment stats in nf-core/fastq_align_bamcmp_bwa subworkflow
- new subworkflow: FASTA_GXF_BUSCO_PLOT
- new module: CATPACK_DOWNLOAD HOT 1
- new module: CATPACK_PREPARE HOT 1
- new module: CATPACK_BINS HOT 1
- new module: VAMB_BIN
- new module: DREP_COMPARE HOT 1
- new module: DREP_DEREPLICATE HOT 1
- new list of proteomics modules HOT 1
- deprecate pbbam/pbmerge (maybe new module: pbtk/pbmerge) HOT 2
- Add `deprecated` flag for deprecated modules
- iqtree: optional output files missing from module
- new File breaks cloud execution in bcl_demultiplex HOT 9
- new module: MuSE
- Add stub run to CSVTK_CONCAT
- [FEATURE] Return primary alignment bam file and index in nf-core/fastq_align_bamcmp_bwa subworkflow
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