Comments (6)
Hello @ypriverol,
I see you have the version of nf-validation pinned in the dev branch. This specifies which version of the plugin to use. It would be good to have it in the master branch too, so to do a release of the pipeline soon.
from quantms.
Hello!
nf-validation
plugin will have soon a new release (v2.0) which has breaking changes.
This will break the usage of all pipelines that don't pin the version of this plugin, as Nextflow tries to pull the latest version.
- ❓ How to pin the version:
Add this to yournextflow.config
file (notice the@1.1.3
):
plugins {
[email protected]
}
-
🚨 Release a patch release as soon as possible!
Either if you already pinned the version on your dev branch or if you are going to add it now, please release this changes ASAP, to avoid breaking the usage of the latest version of your pipeline when the new version ofnf-validation
comes out. -
🤓 How to use the new version of nf-validation?
If you want to be prepared for the new version of nf-validation, this will use the latest version of a JSON Schema draft. You will have to update thenextflow_schema.json
andinput_schema.json
files (and any other JSON schemas that you use!).
You can find a migration guide here.
from quantms.
PR for the Template update here bigbio#358
from quantms.
@ypriverol I don't think this will be solved by a template update. We have to change it manually
from quantms.
But it passes all the tests. @mirpedrol Can you check this PR which pass all the tests for the next released template if it solve the issue? bigbio#358
from quantms.
this has been done.
from quantms.
Related Issues (20)
- proteomicsLFQ removes features with few measurements from MSstats input HOT 2
- [Discussion] modification specification propagation HOT 3
- What is singularity_pull_docker_container? HOT 3
- move to sdrf-pipelines version 0.0.23
- Document new sage option and move to a stable release for the adapter HOT 1
- SAGE run in a failing job HOT 1
- Can't assign 4 names to a 0 column data.table MSStats errror HOT 5
- Running this on Kubernetes or docker HOT 1
- Tests for the Python scripts in `./bin` HOT 2
- Some problem in learning quantms source code and OpenMS HOT 2
- DIA test data SDRF file is missing required column HOT 2
- error in reference_channel HOT 1
- Usability tests/improvements HOT 1
- Error fixed: file not found: 'MSGFPlus.jar' in google cloud HOT 1
- fix links to TOPP tools HOT 1
- DIA-NN Analysis parameters always trigger DDA-LFQ jobs? HOT 1
- Upgrade to OpenMS 1.9.1 with Comet 2023 HOT 2
- Add the Zenodo Id properly
- Post-release 1.1.1 HOT 1
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google ❤️ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.
from quantms.