Comments (6)
jma1991
commented on August 11, 2024
Please can you post your sample and contrasts sheet? Additionally, can you try again with the latest dev branch. We have pushed a few fixes in the last couple of days which might be related.
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paolo-kunderfranco
commented on August 11, 2024
Here are there, sorry for the delay. Best
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paolo-kunderfranco
commented on August 11, 2024
any suggestion?
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jma1991
commented on August 11, 2024
Hi @paolo-kunderfranco - Please could you try with the latest dev branch as suggested in my last reply?
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jma1991
commented on August 11, 2024
Closed given no reply. Please re-open if you are still experiencing the error.
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paolo-kunderfranco
commented on August 11, 2024
Hi, I just tried the new develop version, and the same error still persist:
N E X T F L O W ~ version 23.04.2
Launching https://github.com/nf-core/rnasplice [big_franklin] DSL2 - revision: 9fe10b0 [dev]
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Related Issues (20)
- link to example contrastsheet.csv is not working HOT 1
- Empty output for BAM+rMats HOT 2
- make contrasts file names consistent with those of the differentialabundance pipeline HOT 1
- Missing rMATS arguments HOT 2
- DEXSeq-DTU Stager pScreenAdjusted HOT 1
- sashimi_plot error HOT 2
- contrast file problem? HOT 7
- EXITING because of FATAL ERROR: Genome version: 20201 is INCOMPATIBLE with running STAR version: 2.7.9a HOT 2
- MISO error HOT 3
- The processes for splitting files are running very slowly with large numbers of input samples HOT 5
- Error: suppa_split_file.R Input_file must contain samplesheet samples. HOT 2
- ERROR ~ Error executing process > 'NFCORE_RNASPLICE:RNASPLICE:DRIMSEQ_DEXSEQ_DTU_SALMON:DRIMSEQ_FILTER (1)' HOT 11
- Error in DRIMSeq::dmDSdata(counts = counts, samples = samps) HOT 3
- Error single-end execution HOT 1
- Error in SUPPA: Clustergroups are assigned incorrectly HOT 4
- Miso error HOT 8
- `NFCORE_RNASPLICE:RNASPLICE:DRIMSEQ_DEXSEQ_DTU_SALMON:DEXSEQ_DTU (1)` HOT 7
- RNA splice output
- Merged genes output HOT 3
- STAGER error: subscript out of bounds HOT 4
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