Comments (3)
grst
commented on June 21, 2024
related discussion for adding cellranger multi:
#174
The cellranger multi module on nf-core/modules has been merged:
nf-core/modules#3229
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pakiessling
commented on June 21, 2024
@grst Cool. Does that mean I can use it in nf-core/scrnaseq yet or does the module still need to be incoperated?
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grst
commented on June 21, 2024
No, this still needs to be implemented here. I was just linking the issues for reference.
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Related Issues (20)
- Switch to use central nf-core modules
- Autorenaming of files in new cellranger module leads to erroneous renaming of sample ID containing R1 in it, like in SRR ids HOT 2
- Multi-omics support (meta-issue) HOT 1
- exceeded running time limit (8h) HOT 3
- Crash when specifying existing --star_index using star aligner HOT 6
- Bump up kb to 0.28.0 HOT 3
- Use nf-validation plugin HOT 1
- Update or remove universc HOT 8
- Tests for cellranger-arc HOT 1
- MuData conversion
- Utilize central modules for simpleaf workflow HOT 1
- The cellrangerarc cannot start successfully HOT 2
- When aligner is cellrangerarc the step MTX_TO_SEURAT failed HOT 3
- Avoid error on unknown headers in input.csv HOT 4
- Issues with samplesheet.csv as well as additional columns in the samplesheet HOT 3
- Samplesheet Check Bug HOT 1
- Flexible input read format with STARsolo with --soloBarcodeReadLength HOT 1
- Make scrnaseq pipeline v2.5.1 compatible with nextflow v22.04.0 HOT 1
- Clean up mtx conversion code
- Update to the latest simpleaf HOT 3
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