Comments (5)
Will be fixed as part of #276.
from scrnaseq.
Should be fixed in 2.7.0. If the issue persists please reopen/make a new ticket.
from scrnaseq.
Just for the gtf of refdata-gex-GRCh38-2024-A
, the file size balloons from 61 Mb to 1.7 Gb when gunzip'd. It will be great to be able to use the gzip'd versions of the fasta and gtf files.
from scrnaseq.
Still seems to be an issue in latest release
from scrnaseq.
#276 has not been merged yet, this will be part of 2.7
from scrnaseq.
Related Issues (20)
- Running 'cellranger-arc count' with existing genome index
- cellranger-multi implementation follow-up
- Trimming R1 fast files in all aligners HOT 4
- Time limit of AlevinQC HOT 3
- Specify cellranger version HOT 1
- scrnaseq will not recognize my genome file path HOT 2
- `--cellranger_index` only appears to work if `--validate_params false` provided HOT 3
- cellranger_count.py: capture stderr and stdout HOT 4
- Implement sample demultiplexing followed by VDJ + feature barcode analysis per sample HOT 5
- pipeline not compatible with nextflow 23 => PosixFileAttributeView HOT 1
- cellranger count => Your reference does not contain the expected files HOT 2
- Error while excuting emptydrops HOT 1
- nextflow inspect does not work due to missing parameters HOT 2
- Support for 10x Gem-X V4 libraries HOT 5
- Tests are not executed HOT 3
- Standardize h5ad/seurat var gene annotations across aligners HOT 1
- test_full-profile not running out-of-the-box HOT 1
- results from awsmegatests missing on homepage
- MTX_TO_H5AD module cannot take ch_star_index
- Allow pre-built cellranger index, CellrangerARC index, simpleaf Index, and simpleaf tx2pgene load from igenomes.json HOT 1
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from scrnaseq.