Comments (1)
Hi @bcpd
Within taxprofiler there isn't currently any particular guidance other than make sure your database parameters are adapted for long reads.
I would recommend checking the literature for specific advice on which tools would be most suitable for your particular project and compare with what is available in the pipeline.
Note that our next major release (1.2) will extend to more long-read specific profilers, but it isn't really the purpose of the pipeline to describe 'best practises' of specific data types (as it normally depends on the project...0
from taxprofiler.
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