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aim-tutorial

Tutorial to run the isolation with migration model in Beast2

baltic

baltic - backronymed adaptable lightweight tree import code for molecular phylogeny manipulation, analysis and visualisation. Development is back on the evogytis/baltic branch (i.e. here).

bdmm-prime

Modified implementation of the BDMM multi-type birth-death model for BEAST 2.

bdsky

BDSKY version for Flu Basel Project

bdskytwosamples

Birth Death Serial Skyline Model for BEAST2

beastlabs

A package for BEAST 2 implementing generally useful stuff

cban

cban-1

releases of beast2 packaged zip files in a reliable location

coalpt

BEAST2 implementation of the Coalescent with Plasmids-

coalre

Beast2 implementation of the coalescent with reassortment

coupledmcmc

Adaptive parallel tempering for Beast2

coupledmcmc-material

Material for the coupled MCMC paper

coupledmcmc-tutorial

Taming the Beast tutorial to run BEAST2 with coupled MCMC

flubaselphylo

glm-material

Material for the time variant GLM manuscript

glm-tutorial

Tutorial for the GLM approach to MASCOT

isolation-with-migration

mascot

BEAST2 implementation of the Masco approximation of the structured coalescent with forwards/backwards algorithm for node state calculation

mascot-material

mascot-tutorial

Tutorial on how to set-up a Mascot analysis

mascotskyline-material

Material for the Mascot skyline manuscript

mascotskyline-tutorial

TtB tutorial to run MASCOT Skyline in BEAST2

master

A versatile simulation engine for stochastic population dynamics models.

nab

Additions to BEAST2 that are not large enough to justify being and independent package

ncov

Nextstrain build for novel coronavirus (nCoV)

ncov-nicola

Analyses of the available nCov data

ncov-phylodynamics

Phylodynamic estimation of nCoV incidence and prevalence

neolamprologus

Neolamprologus analysis for Beast2 paper

nicfel.github.io

packages

Released BEAST 2 packages