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anderson-hcp

Some HCP utilities

bayesgpfit

Bayesian Gaussian Process Regression

bep001

Project management repository (primarily issues) for BIDS Extension Proposal 001

bids-specification

Brain Imaging Data Structure (BIDS) Specification

bids-website

Website for the Brain Imaging Data Structure standard.

blm-py

This repository contains all code for the python implementation of distributed OLS for locally stored data.

blmm

This repository contains all code for the BLMM toolbox. It is currently a WIP.

bsglmm

Bayesian Spatial Generalised Linear Mixed Model

cbma_filedrawer

cobidas

cobidas_chckls

Working repository to turn the COBIDAS into a user friendly checklist

compose-docs

Neurosynth-Compose Documentaiton

confsets

contour_inference_2018

Contour Inference for Group-level fMRI Results

copesets

This repository contains functions to compute CopeSets for the SNR and the Mea Signal using Matlab

dm-template

dvars

Insight & Inference for DVARS: 3-part variance decomposition, gives units & p-values for rs-fMRI diagnostic.

fctspm

Using spm1d package (v.0.4.3), compute anova and post-hoc tests from anova1 to anova3rm, with a non-parametric approach (permutation tests)

fmriprep

fMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse fMRI data. The transparent workflow dispenses of manual intervention, thereby ensuring the reproducibility of the results.

fslutils

Utilities for FSL

hcputils

Utility scripts for the Human Connectome Project

heudiconv

A flexible DICOM converter for organizing brain imaging data into structured directory layouts

matlab

Matlab tools that others might find useful

meta_regression_cbma

implementation with simulated data

mriqc

Automated Quality Control and visual reports for Quality Assesment of structural (T1w, T2w) and functional MRI of the brain

multi-language-demo

Material to accompany https://blog.jupyter.org/i-python-you-r-we-julia-baf064ca1fb6

narps

Code related to Neuroimaging Analysis Replication and Prediction Study

nidm

NIDASH Data Model: a library for neuroimaging data sharing

nilearn2021

nimare

Coordinate- and Image-based meta-analysis in Python