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chrx

Run METAL meta-analysis of chrX

diverse_pops

finn_haps

h2part

Scripts for estimating h2 with ldsc

hail

Scalable genomic data analysis.

ldsc

LD Score Regression (LDSC) in Python 3

ldscsim

Simulation framework for testing LD score regression

msprime

Simulate genealogical trees and genomic sequence data using population genetic models

msprime_pedigrees

msprime_sim

openabm-covid19

OpenABM-Covid19: an agent-based model for modelling the spread of SARS-CoV-2 (coronavirus) and control interventions for the Covid-19 epidemic

openabm-covid19-simulations

OpenABM-Covid19 simulations

oxford-statgen-summer-school

Course materials for the Oxford Statistical Genomics Summer School (https://www.conted.ox.ac.uk/courses/oxford-statistical-genomics-summer-school)

pathos

parallel graph management and execution in heterogeneous computing

picopili

Fork of ricopili for development of pipeline for family-based data

prscs

Polygenic prediction via continuous shrinkage priors

qc_step_templates

rfmix

RFMIX - Local Ancestry and Admixture Inference Version 2

rg_sex

Calculate male-female rg

risk_gradients

Risk gradients for genome-wide polygenic scores

sex_linreg

Nested linear regression models to determine phenotypic association of sex

sexdiff

Scripts for calculating significantly different loci between sexes.

sim_sumstats

Package for simulating GWAS summary statistics

smiles

spark

Code for SPARK QC

split

chunking/meta-analysis GWAS + GWAS on split datasets

sumstats_corr

Create correlation matrices from sumstats

test_repo

Repository for testing git commands

tsconvert

Utilities for converting tree sequences to and from other formats

tskit

The tree sequence toolkit