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awesome-single-cell

List of software packages for single-cell data analysis, including RNA-seq, ATAC-seq, etc.

cellassign

Automated, probabilistic assignment of cell types in scRNA-seq data

clonevol

Inferring and visualizing clonal evolution in multi-sample cancer sequencing

computer-code-for-pml-molecular-subtypes

R scripts and input data needed to reproduce the results in the manuscript, "Molecular subtyping reveals immune alterations associated with progression of bronchial premalignant lesions"

dreamir

miRNA targets differential regulation analysis

ecotyper

gsva

Gene set variation analysis for microarray and RNA-seq data

ningb.github.io

Boting Ning's Personal Site

oncoanalyser

A comprehensive cancer DNA/RNA analysis and reporting pipeline

scruff

Single Cell RNA-seq UMI Filtering Facilitator

tableone

Simple R package for generating table one statistics across multiple groups