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3d-brain-dbs

ants

Advanced Normalization Tools (ANTs)

babak_lib

Babak's library

bih-cluster

BIH Cluster Wiki

charls

CharLS, a C++ JPEG-LS library implementation

cuwcl4c

Bypass Wait, Code & Login on Websites

dbsegment

This is a deep learning-based method to segment deep brain structures and a brain mask from T1 weighted MRI.

dcm2niix

dcm2nii DICOM to NIfTI converter: compiled versions available from NITRC

douban.fm

:radio: douban.fm based on Python

dsi-studio

Diffusion MRI analysis tool

ecslave

light ethercat slave

ethercat

IgH EtherCAT Master for Linux

fig2u3d

Export MATLAB figure as U3D file or directly to 3D interactive PDF

google-translator-tooltip-expanded

Google Translator Tooltip Expanded, 谷歌翻译提示框扩展

homebrew-caskformula

Tap containing formulae for casks

itk

Insight Toolkit (ITK) -- Official Repository. ITK builds on a proven, spatially-oriented architecture for processing, segmentation, and registration of scientific images in two, three, or more dimensions.

leaddbs

LEAD-DBS is a MATLAB-toolbox facilitating the: reconstruction of deep-brain-stimulation (DBS) electrodes in the human brain on basis of postoperative MRI and/or CT imaging, the visualization of localization results in 2D/3D, a group-analysis of DBS-electrode placement results and their effects on clinical results, simulation of DBS stimulations (calculation of volume of activated tissue – VAT) and diffusion tensor imaging (DTI) based connectivity estimates and fiber-tracking from the VAT to other brain regions (connectomic surgery). LEAD-DBS builds on SPM8/12, especially regarding warping and segmentation procedures.

matlab-dockerfile

Create a docker container that contains a MATLAB install

niimath

niimath - a clone of fslmaths

openjpeg

Official repository of the OpenJPEG project

pigz

A parallel implementation of gzip for modern multi-processor, multi-core machines.

pthreads4w

Builds Windows Native via CMake

spykeviewer

Spyke Viewer is a multi-platform GUI application for navigating, analyzing and visualizing electrophysiological datasets.

surf-ice

GLSL surface rendering source code. Compiled versions available from NITRC. Loads 3DS, CTM, DXF, FreeSurfer, GII (GIfTI), GTS, LWO2, MS3D, MZ3, NV (BrainNetViewer), OBJ, OFF, PLY, STL, VTK. Tractography formats include BFloat, PDB, TCK, TRK, and VTK. Also NIfTI format voxelwise images.

synthseg-models

synthsr-models

synthstrip-models

u3d

Universal 3D Sample Software

userscript

Greasemonkey 脚本

vim

vim配置文件和插件