Comments (7)
and add at least a single test ;-)
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is there a realistic dicom dataset available for use? if so, we can add tests, demos, documentation, etc.,.
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yesterday I have got some lame phantom dataset (coarse resolution, just 1 anat, 1 dwi, 2 runs, fieldmap per run, 2 tasks): http://datasets.datalad.org/test/dartmouth-siemens/PHANTOM1_3/ but it is not as small as I think we would need for a test (139MB). but smth to start with? ;) I could probably try to reduce its size even further
git clone http://datasets.datalad.org/test/dartmouth-siemens/PHANTOM1_3/.git
cd PHANTOM1_3
git annex get .
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thanks @yarikoptic!
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@yarikoptic - did you group those dicoms, or did they come out of the scanner that way?
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They are exactly how scanner exported then to USB flash drive. I did nothing to them yet ;-)
On August 27, 2016 9:28:44 AM EDT, Satrajit Ghosh [email protected] wrote:
@yarikoptic - did you group those dicoms, or did they come out of the
scanner that way?You are receiving this because you were mentioned.
Reply to this email directly or view it on GitHub:
#10 (comment)
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closing this - feel free to reopen
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Related Issues (20)
- Add/Extend dataset_description.json:GeneratedBy with information about heudiconv/heuristic (if possible)/dcm2niix
- Add auto-changelog conventions to Contributors guide HOT 1
- [JOSS]: narrate James Kent's tutorial into a "script" tutorial within our documentation HOT 1
- Audit custom heuristics tutorial
- reproin: might want to change logic for dups to actually use datetime not seq number HOT 1
- why release check said it is not needed? HOT 2
- Dicom to Nifti Singularity Conversion Error: numpy.exceptions.AxisError: axis 1 is out of bounds for array of dimension 1 HOT 1
- Skip images that have already been converted instead of throwing an error HOT 1
- having an option to rerun heuristic instead of reload HOT 4
- BOLD_NOT_4D for one particular run (converting both single band and multi band files)
- enhanced dicoms (XA) and sequence_name in PulseSequenceName dicom tag
- ORCID for JOSS publication for @toddt HOT 1
- ReproIn name for siemens GRE fieldmap? one name in cockpit makes dicoms with two SeriesIds (mag and phase) HOT 2
- populate_intended_for prefers `task` entity with `CustomAcquisitionLabel` method HOT 4
- ReproIn heuristic uses `phase` suffix instead of `part-phase`
- Dicom to BIDS--Manual renaming Help!
- Converting large numbers of DICOM image produces no results
- events files get re-created for existing bold files (batch/incremental mode)
- How are task-....json files created?
- Feature Request: support dicom datetime with timezone information
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