Neerja Katiyar's Projects
Script to integrate disordered regions of proteins for annotation pipeline.
ATAC-seq Pipeline in conjunction with Duygu Ucar & Jacques Banchereau Laboratories
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
Scripts for bioinformatics analysis.
A computational pipeline for bulk ATAC-seq (or RNA-seq)
The Jackson Laboratory Computational Sciences Nextflow based analysis pipelines
Color blindness friendly visualization of single-cell and bulk RNA-sequencing data
Read fast file, calculate qc statistics and generate plot.
Data Analysis in Genome Biology
Submission form for sequencing center at UCR
Jackson Labs hands-on workshop material for using Jupyter Notebooks on CloudOS
Tutorial for Jackson Labs intro to Nextflow, containers, FlowCraft and Deploit
Course materials for machine learning in Python.
Add my scripts for mice immune aging project.
hts_pipeline
Neerja Katiyar's website
Shiny_apps_R
Single cell R scripts (Seurat, Signac and others)
Project Website:
UCR Bioinformatics core facility website
Proteomics website
Parse VCF (Variant calling format) file, calculate statistics on variants and filter
Website to take VCF as input and pull out information based on user's request.