nki-ccb Goto Github PK
Name: CCB, NKI
Type: Organization
Bio: Computation Cancer Biology Group, the Netherlands Cancer Institute
Location: Amsterdam, the Netherlands
Blog: http://ccb.nki.nl
Name: CCB, NKI
Type: Organization
Bio: Computation Cancer Biology Group, the Netherlands Cancer Institute
Location: Amsterdam, the Netherlands
Blog: http://ccb.nki.nl
BCM3 - Bayesian Inference for Computational Models
Common Insertion Site Mapping Platform implemented as an R package for statistical analysis of retroviral insertional mutagenesis screens.
A method for network reconstruction and quantification from perturbation experiments
Notebooks to reproduce the figures from CNR manuscript (Bosdriesz et al., Bioinformatics, 2018)
R package for the Detection of Imbalanced Differential Signal (DIDS) algorithm.
DISCOVER co-occurrence and mutual exclusivity analysis for cancer genomics data
Flexible gene set enrichment analysis
Functional Sparse-Factor Analysis
Radiogenomic analysis of breast cancer by linking MRI phenotypes with tumor gene expression
Tool for identifying transposon insertions and their effects from RNA-seq data.
Infers a topology of relationships between different datasets, such as multi-omics and phenotypic data recorded on the same samples.
An R Markdown file containing code to reproduce all figures from our iTOP publication
R code for Kernel Convolved Rule Based Mapping
A non-linear mixed effects model for estimating compound sensitivity
The Multitask Variable Importance (Multitask VI) is a modified version of the permuted variable importance score for Random Forests. Essentially, for a Random Forest trained simultaneously for multiple response vectors, it allows the inference of variable importance scores per variable and per task.
Multivariate probability density approximation R package
Implementation of Percolate, an exponential family JIVE statistical model for multi-view integration
Post-partum breast cancer
Jupyter notebooks and code to reproduce figures
Analyses for the PRECISION DCIS immune paper (in press)
RUBIC detects recurrent copy number aberrations.
Sobolev alignment of deep probabilistic models for comparing single cell profiles
A two-stage regression method that can be used when various input data types are correlated, for example gene expression and methylation in drug response prediction. In the first stage it uses the upstream features (such as methylation) to predict the response variable (such as drug response), and in the second stage it uses the downstream features (such as gene expression) to predict the residuals of the first stage. In our manuscript (Aben et al., 2016), we show that using TANDEM prevents the model from being dominated by gene expression and that the features selected by TANDEM are more interpretable.
Python implementation of TRANSACT, a tool to transfer non-linear predictors of drug response from model systems to tumors.
Scripts supporting TRANSACT manuscript
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.