nlp-kg Goto Github PK

ac297r_2019_kensho

Template for AC297r projects

awesome-bioie

🧫 A curated list of resources relevant to doing Biomedical Information Extraction (including BioNLP)

awesome-explainable-graph-reasoning

A collection of research papers and software related to explainability in graph machine learning.

bern2_tigergraph_biomedical_knowledgegraph

bert-error-analysis

Comparing performance of BERT vs. other NLP models on individual cases from benchmark datasets

bible_text_gcn

Pytorch implementation of "Graph Convolutional Networks for Text Classification"

biograkn-covid

BioGrakn - COVID Knowledge Graph

biokg

A Knowledge Graph for Relational Learning On Biological Data

biomedical-knowledge-graph

typedb project

bioner-progress

This repository aims to track the progress in BioNER and give a related paper list and an overview of the state-of-the-art (SOTA).

biosentvec

BioWordVec & BioSentVec: pre-trained embeddings for biomedical words and sentences

blogs

Jupyter notebooks that support my graph data science blog posts at https://bratanic-tomaz.medium.com/

ckg

Clinical Knowledge Graph (CKG) is a platform with twofold objective: 1) build a graph database with experimental data and data imported from diverse biomedical databases 2) automate knowledge discovery making use of all the information contained in the graph

clinical_trial_graph

clinicaltrials_prediction

Clinical trial prediction

cometa

Corpus of Online Medical EnTities: the cometA corpus

crossbar

Comprehensive Resource of Biomedical Relations with Deep Learning Applications and Knowledge Graph Representations

ctkg

The Clinical Trials Knowledge Graph

data_analytics_examples

data_cord19

Transfers CORD-19 data into a neo4j graph

ddi_blkg

Drug-Drug Interaction Prediction on a Biomedical Literature Knowledge Graph

decart_rule_based_nlp

dgl

Python package built to ease deep learning on graph, on top of existing DL frameworks.

dgl-lifesci

Python package for graph neural networks in chemistry and biology

dig-etl-engine

Download DIG to run on your laptop or server.

disease_ontologies_for_knowledge_graphs

Software "Disease_ontologies_for_knowledge_graphs" - a knowledge base solution that uses Grakn core and disease ontologies cross-references to allow easy switch between ontology hierarchies for data integration purpose.

docker-compose-bioportal

A Docker compose to have a fully working BioPortal development environment

doctorai-ui

doctorai_walkthrough

drkg

A knowledge graph and a set of tools for drug repurposing