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2014

Official content for the Fall 2014 Harvard CS109 Data Science course

2015-cs171-homework

Homework submissions for Harvard's CS171: Visualization

2015-tutorials

tutorials for 2015 EDAMAME

2016-python-gene-expression-workshop

Data and Jupyter notebooks for the workshop "Gene Expression Analysis in Python" (2016)

2017

Course material for BST 260 in Fall 2017

activity-prediction

Using data from devices such as Jawbone Up, Nike FuelBand, and Fitbit to to predict the manner in participants they did the exercise.

adam

ADAM is a genomics analysis platform with specialized file formats built using Apache Avro, Apache Spark and Parquet. Apache 2 licensed.

aifh

Artificial Intelligence for Humans

airway_quants

Salmon quantifications of samples from the Bioconductor 'airway' package

altair

Declarative statistical visualization library for Python

api-client-python

Provides a simple genome browser that pulls data from the API in Python.

applied-computational-genomics

Applied Computational Genomics Course at UU: Spring 2018

auto-sklearn

autokeras

accessible AutoML for deep learning.

awesome-awesomeness

A curated list of awesome awesomeness

aws-mutation-calling

A Large Scale, Cloud Based, Low Cost and Reproducible Mutation Calling Pipeline Using Docker Containers

aws-nuke

Nuke a whole AWS account and delete all its resources.

aws-serverless-workshops

Code and walkthrough labs to set up serverless applications for Wild Rydes workshops

aws-twitter-crawler

Python client for the Twitter Streaming API that parses tweets and stores them in a MySQL.

ballgown

Bioconductor package "ballgown", devel version. Isoform-level differential expression analysis in R.

best_hospital

R function returns a character vector with the name of the hospital that has the best (i.e. lowest) 30-day mortality for the specified outcome in that state.

bigdl-tutorials

Step-by-step Deep Leaning Tutorials on Apache Spark using BigDL

bioc-refcard

Bioconductor cheat sheet

bioc2016addendum

bioc2016singlecell

Bioconductor workshop: Analysis of single-cell RNA-seq data with R and Bioconductor

biocancer

:cancer: :free: A Shiny App for Interactive Multi-OMICS Cancer Data Visualization and analysis

bioinformatics-algorithms

Python code covering some of the algorithms underlying the following fundamental topics in bioinformatics.

bioinformatics-algorithms-coursera

Solutions to Programming Assignments for Bioinformatics Algorithms (Part 1) on Coursera.org

book

Compiled and pretty version of labs

bwa

Burrow-Wheeler Aligner for pairwise alignment between DNA sequences