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Hi, welcome to my page on Github.

About me

I am doing research in computational biophysics. My interests include functional mechanisms of DNA-protein binding, multi-scale organization of the genome, liquid-liquid phase separation in gene expression, and modeling of biomolecules in molecular dynamics simulations. I write code for MD softwares GENESIS and CafeMol.

In addition to my professional work, I enjoy participating in non-contact sports, and in 2009, I began practicing the Rubik’s cube. My passion and dedication paid off in 2010, when I set a new Chinese national record for the 2×2×2 cube during a competition. Although I have not maintained the same level of practice since then, I am still proud of my achievement and encourage others to pursue their hobbies and passions outside of work. For those interested, my official records can be found on the World Cube Association.

Find me

Cheng Tan's Projects

.tmux icon .tmux

Oh My Tmux! My pretty + versatile self-contained tmux configuration

awesome-cv icon awesome-cv

Awesome CV is LaTeX template for your outstanding job application

cgnet icon cgnet

learning coarse-grained force fields

chatterbot icon chatterbot

ChatterBot is a machine learning, conversational dialog engine.

dssp icon dssp

Application to assign secondary structure to proteins

emacs-pdb-mode icon emacs-pdb-mode

pdb-mode is an emacs-lisp minor mode for Emacs to perform a number of useful editing functions on Protein DataBank (PDB) formatted files. XEmacs and/or GNU Emacs are available for most computing platforms.

epmv icon epmv

The embedded Python Molecular Viewer (ePMV) runs molecular modeling software directly inside of professional 3D animation applications (hosts) to provide simultaneous access the capabilities of all of the systems.

etechou icon etechou

PDF planner with clickable date links created with LaTeX.

genesis-mode icon genesis-mode

Emacs Genesis-mode for user-friendly reading and writing Genesis input files.

gitignore icon gitignore

A collection of useful .gitignore templates

gromacs icon gromacs

Public/backup repository of the gromacs molecular simulation toolkit

handson-ml3 icon handson-ml3

A series of Jupyter notebooks that walk you through the fundamentals of Machine Learning and Deep Learning in Python using Scikit-Learn, Keras and TensorFlow 2.

hilbert3d icon hilbert3d

Just another tool for generating Hilbert space filling curve.

hmm_tutorials icon hmm_tutorials

Hands-on tutorials for Markov state modeling of MD and EXP data

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