Related Issues (20)
- feature request: time() everything HOT 1
- feature request: add --remove <RunID>/ --remove-demux <RunID> / --rename <RunID>/<Sample> / --remove-fortransfer <RunID> / --(re)upload-nird <RunID> / --(re)upload-vigasp <RunID> HOT 2
- feature request: break script into python modules
- feature request: implement unit testing
- discussion: what does demultiplexing do, if a project duplicate is found? HOT 3
- discussion: 221124_M06578_0124_000000000-KNW3P Sample_Project name: 12160-123-ringtest ? HOT 5
- bug: Some software save values quoted and prevent the code of getting the index of demux.Sample_Sheet HOT 3
- feature request: Get demultiplexing script to calculate coverage for each sample HOT 18
- extra, empty nameProjectList[] item, always last, always empty. should not be there. HOT 1
- Changing name on files after demultiplexing and transfer to NIRD/VIGAS HOT 2
- bug: .md5 files and .sha512 files are not written correctly HOT 4
- Instructions for NIRD transfer HOT 4
- os.chmod( demux.sampleSheetFilePath, currentPermissions & ~stat.S_IEXEC ) # demux.SampleSheetFilePath is probably +x, remnant from windows transfer, so remove execute bit ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ PermissionError: [Errno 1] Operation not permitted: '/data/rawdata/230919_M06578_0168_000000000-DHTMT/SampleSheet.csv' HOT 1
- new feature: FIle names missing a "." after the Sequencer ID HOT 1
- new feature: mechanism to perform file and directory permission normalization within /rawdata
- sha512sum = hashlib.sha256( filetobehashed ).hexdigest( ) HOT 4
- test: do the calculated hashlib.md5( filetobehashed ).hexdigest( ) / hashlib.sha256( filetobehashed ).hexdigest( ) match what md5sum -c <fileToBeChecked.md5> / sha512sum -c <fileToBeChecked.sha512> outputs? HOT 1
- test: check that the calculated hashlib.md5 and hashlib.sha512 are 128 and 64 bytes respectively HOT 1
- feature request: detect when a run needs to be demultiplexed as single lane
- test: check that the outputted hash files pass the md5sum -c / sha512sum -c sniff test
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from demultiplexrawsequencedata.