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Nicolas Servant's Projects

cooler icon cooler

A cool place to store your Hi-C

defuse icon defuse

An Algorithm for Gene Fusion Discovery in Tumor RNA-Seq Data

emtiron icon emtiron

Data analysis project of the study "CD44 regulates cellular plasticity by mediating iron endocytosis". Müller, Sindikubwabo et al. 2019

github-metadata icon github-metadata

Jekyll plugin to propagate the `site.github` namespace and set default values for use with GitHub Pages.

hic-pro icon hic-pro

HiC-Pro: An optimized and flexible pipeline for Hi-C data processing

hitc icon hitc

This is a read-only mirror of the Bioconductor SVN repository. Package Homepage: http://bioconductor.org/packages/devel/bioc/html/HiTC.html Bug Reports: https://support.bioconductor.org/p/new/post/?tag_val=HiTC.

iced icon iced

Normalizing Hi-C contact counts efficiently

modules icon modules

Repository to host tool-specific module files for the Nextflow DSL2 community!

multiqc icon multiqc

Aggregate results from bioinformatics analyses across many samples into a single report.

nf-core-hic icon nf-core-hic

Analysis of Chromosome Conformation Capture data (Hi-C). Main fork @

ngi-smrnaseq icon ngi-smrnaseq

Nextflow Small RNA Best Practice analysis pipeline, used at the SciLifeLab National Genomics Infrastructure.

rnaseq icon rnaseq

RNA sequencing analysis pipeline using STAR or HISAT2, with gene counts and quality control

sarek icon sarek

Detect germline or somatic variants from normal or tumour/normal whole-genome sequencing data

test-datasets icon test-datasets

Test data to be used for automated testing with the nf-core pipelines

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