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Name: Dean Bašić

Type: User

Bio: Computation, Evolution. Bioinformatician working out of Australia. Medical Genomics group of Nic Waddell.

Bioinformatician

' I'm a Bioinformatician-Computational Biologist who specialises in long-read transcriptomics analyses and genome annotation. I like to learn from the field of Data Science so I'm often dabbling in small projects of that nature. You can reach me at [email protected]. This is what I'm currently up to:

🧬 Low-frequency pseudogene detection using ~500 long-read Oxford Nanopore datasets, as well as developing a nextflow pipleine for long-read PhospoRibo-seq data
💡 Learning SQL, and single-cell sequencing analysis
🧞 Building an MVC app in Julia using Genie.jl

🔮 Tech and Tools

📦 Container Repositories

docker
quay

Dean Bašić's Projects

adaptive-trial-gih

mock readthedocs for adaptive sampling

bioinfo-scripts

Daily drivers and miscellaneous

charaka-hugo-dbmod

Minimalistic and Responsive blog theme for hugo with my personal modifications

classletters

Essays I found interesting

computationalbiology-for-autodidacts

A collection of resources that I have used (and hereby endorse) for those looking to teach themselves Computational Biology, as well as the branching disciplines which greatly influence comp. bio., such as Probability, Information Theory, Mathematics and so on.

kap

kobeandpascal website

markdownnotes

mbkfam

MBK Main Site

micropipe_db

A pipeline for high-quality bacterial genome construction using ONT sequencing

mphil-code

Analysis Code from MPhil Thesis

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riboflow

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