Broken image yuntongzhang/swe-bench:latest

[nus-apr]

Broken image yuntongzhang/swe-bench:latest

[yuntongzhang]

Could you provide the list of commands used and the system environment so that we can try to reproduce the issue?

[boomerango]

@yuntongzhang just build
docker build -f Dockerfile -t acr .

[boomerango]

@yuntongzhang then next error from conda

Retrieving notices: ...working... failed

>>>>>>>>>>>>>>>>>>>>>> ERROR REPORT <<<<<<<<<<<<<<<<<<<<<<

Traceback (most recent call last):
  File "/root/miniconda3/lib/python3.12/site-packages/conda/exception_handler.py", line 17, in __call__
    return func(*args, **kwargs)
           ^^^^^^^^^^^^^^^^^^^^^
  File "/root/miniconda3/lib/python3.12/site-packages/conda/cli/main.py", line 83, in main_subshell
    exit_code = do_call(args, parser)
                ^^^^^^^^^^^^^^^^^^^^^
  File "/root/miniconda3/lib/python3.12/site-packages/conda/cli/conda_argparse.py", line 196, in do_call
    result = getattr(module, func_name)(args, parser)
             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/root/miniconda3/lib/python3.12/site-packages/conda/notices/core.py", line 108, in wrapper
    channel_notice_set = retrieve_notices(
                         ^^^^^^^^^^^^^^^^^
  File "/root/miniconda3/lib/python3.12/site-packages/conda/notices/core.py", line 40, in retrieve_notices
    channel_notice_responses = fetch.get_notice_responses(
                               ^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/root/miniconda3/lib/python3.12/site-packages/conda/notices/fetch.py", line 44, in get_notice_responses
    for chn_info in executor.map(
                    ^^^^^^^^^^^^^
  File "/root/miniconda3/lib/python3.12/concurrent/futures/_base.py", line 608, in map
    fs = [self.submit(fn, *args) for args in zip(*iterables)]
          ^^^^^^^^^^^^^^^^^^^^^^
  File "/root/miniconda3/lib/python3.12/concurrent/futures/thread.py", line 179, in submit
    self._adjust_thread_count()
  File "/root/miniconda3/lib/python3.12/concurrent/futures/thread.py", line 202, in _adjust_thread_count
    t.start()
  File "/root/miniconda3/lib/python3.12/threading.py", line 992, in start
    _start_new_thread(self._bootstrap, ())
RuntimeError: can't start new thread

$ /root/miniconda3/bin/conda env create -f environment.yml

environment variables:
CIO_TEST=
CONDA_ROOT=/root/miniconda3
CURL_CA_BUNDLE=
LD_PRELOAD=
PATH=/root/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin
:/sbin:/bin
REQUESTS_CA_BUNDLE=
SSL_CERT_FILE=

 active environment : None
   user config file : /root/.condarc

populated config files :
conda version : 24.1.2
conda-build version : not installed
python version : 3.12.1.final.0
solver : libmamba (default)
virtual packages : __archspec=1=haswell
__conda=24.1.2=0
__glibc=2.35=0
__linux=4.19.76=0
__unix=0=0
base environment : /root/miniconda3 (writable)
conda av data dir : /root/miniconda3/etc/conda
conda av metadata url : None
channel URLs : https://repo.anaconda.com/pkgs/main/linux-64
https://repo.anaconda.com/pkgs/main/noarch
https://repo.anaconda.com/pkgs/r/linux-64
https://repo.anaconda.com/pkgs/r/noarch
package cache : /root/miniconda3/pkgs
/root/.conda/pkgs
envs directories : /root/miniconda3/envs
/root/.conda/envs
platform : linux-64
user-agent : conda/24.1.2 requests/2.31.0 CPython/3.12.1 Linux/4.19.76-linuxkit ubuntu/22.04.4 glibc/2.35 solver/libmamba conda-libmamba-solver/23.12.0 libmambapy/1.5.3
UID:GID : 0:0
netrc file : None
offline mode : False

An unexpected error has occurred. Conda has prepared the above report.
If you suspect this error is being caused by a malfunctioning plugin,
consider using the --no-plugins option to turn off plugins.

Example: conda --no-plugins install

Alternatively, you can set the CONDA_NO_PLUGINS environment variable on
the command line to run the command without plugins enabled.

Example: CONDA_NO_PLUGINS=true conda install

The command '/bin/sh -c conda env create -f environment.yml' returned a non-zero code: 1

[yuntongzhang]

The build command runs fine on my system. I can't reproduce the second error as well.

What system are you using? Did the disk run out of space? Just guessing for possibilities here.

There are some posts on apt error when building from Dockerfile, which might be helpful:
https://stackoverflow.com/questions/38002543/apt-get-update-returned-a-non-zero-code-100

[boomerango]

Host is macos, disk space is enough, cpu limit is 6, disk unlimited.

[boomerango]

OK, solved.
Had to change base image and use more stable python

for ref
FROM ubuntu:focal

# Add the missing GPG key 871920D1991BC93C

RUN apt-get update && apt-get install -y gnupg &&
apt-key adv --keyserver keyserver.ubuntu.com --recv-keys 871920D1991BC93C

Update and install necessary packages

RUN apt update && apt install -y gnupg

RUN apt-get -y update

RUN apt update && apt install -y git wget

WORKDIR /root

RUN wget https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh

RUN wget https://repo.anaconda.com/miniconda/Miniconda3-py311_24.1.2-0-Linux-x86_64.sh
RUN bash ./Miniconda3-py311_24.1.2-0-Linux-x86_64.sh -b -p /root/miniconda3
ENV PATH="/root/miniconda3/bin:${PATH}"
RUN conda init

WORKDIR /opt
RUN git clone https://github.com/yuntongzhang/SWE-bench.git

WORKDIR /opt/SWE-bench
RUN conda env create -f environment.yml
RUN ln -sf /bin/bash /bin/sh

ENV DEBIAN_FRONTEND=noninteractive
RUN apt install -y libffi-dev python3-pytest libfreetype6-dev libqhull-dev
RUN apt install -y pkg-config texlive cm-super dvipng python-tk ffmpeg
RUN apt install -y imagemagick fontconfig
RUN apt install -y ghostscript inkscape graphviz
RUN apt install -y optipng fonts-comic-neue python3-pikepdf

RUN echo ttf-mscorefonts-installer msttcorefonts/accepted-mscorefonts-eula select true | debconf-set-selections
RUN apt install -y ttf-mscorefonts-installer

RUN apt install -y vim build-essential libssl-dev

RUN git config --global user.email [email protected]
RUN git config --global user.name acr

COPY . /opt/auto-code-rover
WORKDIR /opt/auto-code-rover
RUN conda env create -f environment.yml