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aggregatebiovar

Aggregation of Multi-subject scRNA-seq Data

agnostos-wf

amalgam

[OFFICIAL] [CoDA] An R package to amalgamate compositions into lower dimensions using genetic algorithms

ampvis2

Tools for visualising amplicon data

animl

Animl comprises a variety of machine learning tools for analyzing ecological data. The package includes a set of functions to classify subjects within camera trap field data and can handle both images and videos.

anvio

An analysis and visualization platform for 'omics data

balticboost

BalticBOOST Biodiversity Assessment Tool

bamtools

C++ API & command-line toolkit for working with BAM data

bcantarel.github.io

Course Material

bdtt

bearid

Hypraptive BearID project. FaceNet for bears.

bes2020gllvmworkshop

GLLVM Workshop material for the BES 2020 Festival of Ecology

biobakery

bioBakery tools for meta'omic profiling

biodiversity-footprint

bioinformatics

random collection of scripts used to process sequences

biotools

Standalone scripts that are useful for manipulating and analysing DNA sequence data

biovcnet.github.io

Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes

bwa

Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)

catfasta2phyml

Concatenates FASTA formatted files to one "phyml" (PHYLIP) formatted file

clustvis

ClustVis web tool

cobrapy

COBRApy is a package for constraint-based modeling of metabolic networks.

complexheatmap

Make Complex Heatmaps

cutadapt

Cutadapt removes adapter sequences from sequencing reads

cutprimers

curPrimers is a tool for trimming primer sequences from amplicon based NGS reads

daa_converter

data-tutorials

diamond

Accelerated BLAST compatible local sequence aligner.

docs

Source repository for https://docs.qiime2.org

documenting-r

Materials for a code review on documenting R code.

emp

Code repository of the Earth Microbiome Project.