Comments (5)
matentzn
commented on August 17, 2024
1
Great, happy merging then!
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chris-grove
commented on August 17, 2024
See
#42
for removal of offending EQ defs from file:
~/src/ontology/wbphenotype-equivalent-axioms-subq.owl
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matentzn
commented on August 17, 2024
Cool, but a real fix would be to add them back as abnormal.tsv were applicable; but I guess with your documented list that will be easy enough. :P Good one.
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chris-grove
commented on August 17, 2024
Well, the plan is to eventually add them as appropriate to the 'abnormal' pattern, but it will take some time (this is the first step), and many will not be transferable to the 'abnormal' pattern.
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chris-grove
commented on August 17, 2024
OK, update: new pull request should address the lowest hanging fruit:
https://github.com/obophenotype/c-elegans-phenotype-ontology/pull/43/commits
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Related Issues (20)
- Illegal equivalencies in WBPhenotype HOT 2
- Duplicate definitions HOT 1
- WBP-DPO logical alignment review HOT 4
- quality part_of anatomical entity HOT 9
- Release tag different than release date (2023-07-10 vs 2023-07-12) HOT 4
- Obsolete GO term imported as not obsolete, throwing ODK pipeline error HOT 3
- Remove duplicates HOT 4
- BFO_0000070 ("s depends on") obsolete? Replace with RO:0002502? HOT 4
- Implement Upheno absent pattern HOT 5
- There are a bunch of classes in the ontology with no labels HOT 3
- We need to update the base product and switch to newest ODK HOT 1
- 7 unsatisfiable classes due to broken EQ: HOT 2
- Create an OBO artefact that just contains terms and class hierarchy HOT 2
- change hasComponent some abnormal to hasModifier some abnormal HOT 1
- Tidy up WBP Upper Level HOT 11
- Investigate Bus Error of last release attempt HOT 3
- Syntax error in Apr 21 2019 release HOT 2
- Fix unfolded protein response terms HOT 1
- Deal with external.txt download. Currently skipped. HOT 2
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