Comments (12)
@malcolmfisher103 There are two options here.
- You go the long way via GO; if you want to try, feel free!
- You go for NBO, which we also use for behavior. The advantage here is that we can create terms quickly ourselves. (Check here) if interested!
from xenopus-phenotype-ontology.
Thanks for directing us to the NBO, we'll consider that as an a alternative option.
from xenopus-phenotype-ontology.
request: increased rate [PATO_0000912]/decreased rate[PATO_0000911] abnormal, absent 'surface breathing', ; increased rate/decreased rate/abnormal 'swimming behaviour', abnormal 'resting posture', absent/abnormal/increased rate/decreased rate 'locomotory behavior'. request. increased rate/decreased rate/abnormal/absent feeding behaviour
(surface breathing would be an additional request for new term with NBO).
from xenopus-phenotype-ontology.
abnormal/absent mating behaviour (GO:0007617)
from xenopus-phenotype-ontology.
ID | Name |
---|---|
GO:0007631 | Feeding behavior |
GO:0007626 | locomotory behavior |
NBO:0000358 | resting posture |
from xenopus-phenotype-ontology.
Summary of terms that still need to be added/requested.
Q | E |
---|---|
abnormal | collision/visual avoidance behavior - NBO request |
abnormal | schooling behavior - NBO request |
abnormal | escape behavior - NBO request |
increased rate/decreased rate/abnormal/absent | surface breathing - NBO request |
increased rate/decreased rate | GO:swimming behavior |
abnormal | NBO:resting posture |
increased rate/decreased rate | GO:locomotory behavior |
increased rate/decreased rate | GO:feeding behavior |
@matentzn We need to set up NBO imports in the XPO.
from xenopus-phenotype-ontology.
Done.
from xenopus-phenotype-ontology.
Awesome! I am writing up the new NBO term requests and will submit tickets soon.
from xenopus-phenotype-ontology.
Actually: would you feel comfortable to just make pull requests instead?
from xenopus-phenotype-ontology.
Sure! So I just edit src/ontology/nbo-edit.owl, correct?
from xenopus-phenotype-ontology.
I send you an email with instructions. Thank you!
from xenopus-phenotype-ontology.
@seger will add subsumptions to GO terms to NBO so that the behaviors classify correctly.
from xenopus-phenotype-ontology.
Related Issues (20)
- Additional GO based homeostasis terms
- Additional GO based metabolism terms HOT 1
- Additional GO based enzyme activity terms
- Addition of whole organism mass terms
- Additional 'increased width' and 'decreased width' terms
- New metaplastic and neoplastic terms
- body axis phenotypes HOT 2
- Add citation
- New GO metabolism based XPO term request
- Add date field HOT 3
- OBSOLETE abnormal histone phosphorylation, NEW TERM abnormal histone kinase activity
- Cilium motility phenotypes refer to an obsolete GO class HOT 10
- XPO is using LFS - which has been squashed by github for our organisation HOT 8
- Please attached xpo-base (all files) to release HOT 1
- Additional NBO based phenotypes
- Proposal for new pattern/terms related to membrane potentials. HOT 2
- xpoAnatomyInLocationTEMP terms
- xpoAnatomyTEMP terms
- new pattern for 'premature' terms applied to all existing terms with 'delayed' BP 'delayed closure of XAOterm' HOT 1
- XPO terms using obsolete GO classes
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google ❤️ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.
from xenopus-phenotype-ontology.