Daniel S Oliveira's Projects
A pipeline to detect chimeric transcripts derived from genes and transposable elements.
Drosophila transposable element canonical sequences
Extensive de-novo TE Annotator
A quick user guide for de novo transposable element (TE) library generation and TE screening. Utilising; the Extensive de novo TE Annotator (EDTA), DeepTE, RepeatMasker and RM_TRIPS.
HyPhy: Hypothesis testing using Phylogenies
Rosette files required to run TEtools pipeline
Software for Quantifying Interspersed Repeat Expression
Quantification of transposable element expression using RNA-seq
Command line used in "Oxidative and radiation stress induce transposable elements transcription in Drosophila melanogaster" study.
Transposable element landscape figures for the Tuatara genome paper 2020