Related Issues (20)
- Make `Compose` transformation object and add `transform` option to `Data`
- Exclude benchmark runs from default pytest runs, make `lite-bench` and `full-bench` test options (tox)
- Add more info about key error from `get_feature`, e.g., what channel type
- Model object abstraction and refactoring
- Fix ``scmm`` error due to zero total counts calling ``torch.lgamma`` (called by ``torch.distributions.NegativeBinomial``)
- Create tutorial notebook for wrapping ``AnnData`` (or ``MuData``) objects into dance ``Data`` object HOT 1
- Add support for containerizing using, e.g., Singularity and Docker
- Add option to `.score` method to take `index` option, which indicates which samples we want to calculate the scores
- Add option for `return_type` to take a list of values aligned with the specified channels
- Make utils for generating `dgl` or `pyg` graphs from processed data
- Unify kwarg: `seed` -> `random_state`
- Use the `download_unzip` utility in `ImputationDataset`
- Fix reported imputation metrics on readme for `GraphSCI` and `DeepImpute`
- Refactor multimodal dataset object to use the dance abstract dataset class
- Fix minor inconsistency at param init for CARD
- error about running dataset(openproblems_bmmc_cite_phase2 ) with scMoGCN HOT 1
- Where can I find documenation? HOT 1
- Running scmogcn.py example - fatal error HOT 1
- pip install pydance HOT 1
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from dance.