Related Issues (20)
- Data used in the paper?
- Gencore failed to process BAM generated by STAR aligner HOT 1
- EOF markers absent
- Extracting UMIs for paired-end data
- gencore don't generate consensus read from two pair reads with reciprocal UMI ,such as UMI ATGC_GCAA and GCAA_ATGC HOT 1
- output bam without FR or RR tag HOT 16
- Prebuild versions of gencore in opengene.org with version history
- what is the max number of interval in a bed for QC report
- The software installation is not working properly. HOT 1
- ERROR: Wrong base with value 0
- Mismatched UMI of a pair of reads HOT 1
- SAM file validation errors after running gencore
- There are one or three reads with the same name after deduplication
- Reads with identical UMIs and mapping coordinates output by Gencore
- '=' symbol in the BAM/CRAM SEQ field HOT 3
- gencore seems to have wrongly modified my SAM alignment record
- in overlap position, gencore doesn't reset quality
- change 'nan' in output to 'NaN'
- gencore-0.17.2 incompatible with python 3.10, python 3.8, python 3.6 or python 2.7
- genecore will change the MD:Z value in the bam after umi cluster?
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from gencore.