Comments (4)
There were some issues with the importing that Python 3 (I assume you're using) didn't like. Should be fixed in this: 8eba1d5#diff-35125e73fe3332e2b0060c628bb30893. Let me know if you've any other issue.
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It solved the issue. However, something else appeared trying to see the structure of the network using pyNeuroML.
pynml MyNetwork.net.nml -graph 4c
The message was:
File "/opt/anaconda3/lib/python3.7/site-packages/neuromllite-0.1.9-py3.7.egg/neuromllite/GraphVizHandler.py", line 14, in <module> from graphviz import Digraph ModuleNotFoundError: No module named 'graphviz'
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That should be fixed by installing the GraphViz package:
apt-get install graphviz
(test installation with: dot -V), and then install the python wrapper for it:
pip install graphviz
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Fixed in master
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Related Issues (20)
- Compare running times of NeuroML file generation with OpenWormReader vs Spreadsheet reader HOT 1
- Create a c302 DataTranslator and DataSources
- Update OpenWormReader to use the latest version of owmeta (pt 2)
- Clarify pipeline from ChannelWorm to c302
- Data c302
- Data Provenance HOT 5
- runnin sh test.sh in cmd HOT 3
- Can't connect to PyOpenWorm HOT 5
- Use OpenWorm backers data source to get backers for c302 network generation.
- first installation error : unable to download c302 module HOT 3
- Quick test problem HOT 2
- List and dictionary command line arguments from README not executable in some shells
- Move tests to travis-ci.com HOT 3
- owmeta installation fails on GH actions HOT 3
- Porting the computation of C302 neural network operations to my neural morphology chip. HOT 3
- Add WormNeuroAtlas to dependencies and add to tests
- fatal error: 'H5public.h' file not found HOT 1
- Deprecated dependencies: Use command line interface to create new network HOT 1
- Document lfs checkout from this repo
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