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2d-ising-model-python

affinewarp

An implementation of piecewise linear time warping for multi-dimensional time series alignment

associations_inference

This repository proposes several methods to infer relevant associations within a set of features.

autograd

An implementation of Automatic Differentiation in Python

automatedmbam

A framework for automating the Manifold Boundary Approximation Method

awesome-single-cell

Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

box-covering

code for box-covering algorithms

c-gplvm

PyTorch implementation of the Covariate-GPLVM

causaldiscoverytoolbox

Package for causal inference in graphs and in the pairwise settings. Tools for graph structure recovery and dependencies are included.

cell_variation

Code for "Untangling biological factors influencing trajectory inference from single cell data"

celloracle

This is the alpha version of the CellOracle package

cellprofiler

An open-source application for biological image analysis

cellrank

Continuous Lineage Decisions Uncovered by RNA Velocity

celltool

Command-line tools for statistical analysis of shapes, particularly cell shapes from micrographs.

celltracker

CellTracker: An Automated Toolbox for Single-Cell Segmentation and Tracking in Microscopy Images

chapydette

Fast Cython implementations of kernel-based change-point estimation algorithms

chatgpt_academic

科研工作专用ChatGPT拓展，特别优化学术Paper润色体验，支持自定义快捷按钮，支持markdown表格显示，Tex公式双显示，代码显示功能完善，新增本地Python工程剖析功能/自我剖析功能

cpsplines

cpt_grn_analysis

cyto-dl

dca

:exclamation: This is a read-only mirror of the CRAN R package repository. DCA — Dynamic Correlation Analysis for High Dimensional Data

densecrf-python

Python Wrapper for Dense CRF

derivativedtw

diamorse

Digital image analysis using discrete Morse theory and persistent homology

diptest

Python/C implementation of Hartigan & Hartigan's dip test, based on Martin Maechler's R package

dit

Python package for information theory.

dmt-signal-processing

Signal compression and reconstruction on complexes preserving topological features via Discrete Morse Theory

documentation

Plotly's Documentation

dowhy

DoWhy is a Python library that makes it easy to estimate causal effects. DoWhy is based on a unified language for causal inference, combining causal graphical models and potential outcomes frameworks.

dtwalign

Comprehensive dynamic time warping module for python