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Name: Jan Oppelt
Type: User
Company: Platomics
Location: Vienna, Austria
Blog: https://jan.bio/blog/
Name: Jan Oppelt
Type: User
Company: Platomics
Location: Vienna, Austria
Blog: https://jan.bio/blog/
Analysis pipeline for recovery of bacterial genomes (primary focus on Treponema pallidum) isolated directly from clinical material
get smallRNAseq summary in piclusters, transposons and genes from bed2 files generated by piPipes or other softwares
cutadapt removes adapter sequences from sequencing reads
Tools to process and analyze deep sequencing data.
Annotate DE contigs identified by DE-kupl.
deSALT - De Bruijn graph-based Spliced Aligner for Long Transcriptome reads
An application for analysis of 5′ endpoints distribution in RNA sequencing datasets. This is particularly useful for techniques that capture 5′ monophosphorylated RNAs, such as 5PSeq, PARE-seq or GMUC. It may also be useful for ribosome profiling datasets and alike.The main workflow of fivepseq is intended for downstream analysis of alignment files to describe the distribution of 5′ endpoints of reads relative to translation start and stop sites, as well as relative to amino acids or codons. It also computes frame preference of 5′ endpoint distribution and captures periodicity patterns.
JAVA framework for accurate SNV assessment
UCSC Nanopore
A tool for projecting genomic alignments to transcriptomic coordinates
piRNA pipeline collection developed in the Zamore Lab and ZLab in UMass Med School
Pipeline for Quality Control of Ribo-Seq data, selection of P-site offsets, and codon usage statistics.
optimization of ribosome P-site positioning in ribosome profiling data
Tools for finding mobile element insertions from single-end datasets
Software for Quantifying Interspersed Repeat Expression
Snakemake workflow for TERA-Seq data analysis
Tools for handling Unique Molecular Identifiers in NGS data sets
Variable utils that I created or collected
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.