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ai-notebooks

Some ipython notebooks implementing AI algorithms

allensdk

code for reading and processing Allen Institute for Brain Science data

astrastack

Astrophotography Stacking Application

audio

Data manipulation and transformation for audio signal processing, powered by PyTorch

auto_avsr

Auto-AVSR: Lip-Reading Sentences Project

automl_common

This repository holds shared utilities that AutoML frameworks may benefit from.

bigstream

Tools for distributed alignment of massive images

bokeh

Interactive Data Visualization in the browser, from Python

bonsai-rx.github.io

A visual programming language for reactive systems

bonvision.github.io

BonVision package support page

cascade

Neuroscience analysis pipeline for my projects in the Andermann lab.

cellpose

a generalist algorithm for cellular segmentation with human-in-the-loop capabilities

cellreg

Registration of cells across sessions.

competition

The choice engineering competition

d2l-en

Interactive deep learning book with multi-framework code, math, and discussions. Adopted at 400 universities from 60 countries including Stanford, MIT, Harvard, and Cambridge.

dan

Official implementation of DAN

dask_stitch

Linear blend stitching for map_overlap calls in dask

docs

Documentation for napari (other than API docs)

docs-1

Documentation site

examples

Example workflows for the BonVision closed-loop visual environment generator

face_recognition

The world's simplest facial recognition api for Python and the command line

fairseq

Facebook AI Research Sequence-to-Sequence Toolkit written in Python.

hbp-bsp-live-papers

ipympl

Matplotlib Jupyter Integration

jepa

PyTorch code and models for V-JEPA self-supervised learning from video.

kit-ge-3-cell-segmentation-for-ctc

Distance-transform-prediction-based segmentation method used for our submission to the 6th edition of the ISBI Cell Tracking Challenge 2021 as team KIT-Sch-GE (2) (now KIT-GE (3)).

kit-ge-3-cell-tracking-for-ctc

mlx

machine learning experiments

mousefacialexpressionanalysis

Extracting emotions from facial expressions in mice

mpl-modest-image

Friendlier matplotlib interaction with large images