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bactmap

A mapping-based pipeline for creating a phylogeny from bacterial whole genome sequences

bioinformatics-internship

ICIPE Bioinformatics Internship

bionformatics_internship

This is my roadmap for the bioinformatics internship at ICIPE.

first-_repo

hello_world

iap

Illumina analysis pipeline

journal_club

machinelearning4genomics

Machine Learning for Genomics Course.

molecular_biology_concepts

myfirstfork

Fork this repository and make changes to the README

nanopore-pipelines

Scripts and pipelines for analyzing Oxford Nanopore long-read data

onboarding

This repository contains the onboarding resources and readings that are recommended for when you join the Bioinformatics team at MBBU

openscience_rdm_handbook

BOSS mini project on Genomic Research Data Management

phylogenetic_analysis_weltevreden-1

A Phylogenetic and Phenotypic Analysis of Salmonella enterica Serovar Weltevreden, an Emerging Agent of Diarrheal Disease in Tropical Regions

practice

This is a practice repo

python4bioinformatics2020

roadmap

This is a roadmap for my bioinformatics internship at ICIPE.

sarek

Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing

seminar_presentations

singularity

SingularityCE is the Community Edition of Singularity, an open source container platform designed to be simple, fast, and secure.

snp-sites

Finds SNP sites from a multi-FASTA alignment file

somatic-and-germline-variant-identification-from-tumor-and-normal-sample-pairs

test-repo

This is a test repo for learning GitHub

tutorials-software-guide

Contains guide on how to run graphical software's, Pipelines and tutorials on sample use cases of analysis on the cluster.

variantvisualization.jl

Julia package powering VIVA, our tool for visualization of genomic variation data. Manual: