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bioinformatics-web-app

A bioinformatics web app built using streamlit and biopython

calculator

A simple calculator GUI with tkinter

dataworkshop

docker_static_build

fastapi

Prototype social media backend built with FastAPI & Postgresql

firebrowser

An R client for broads firehose pipeline, providing TCGA data sets

genetic-drift-simulations

Genetic drift is the change in the frequency of an (gene variant) in a population over multiple generations. An individual’s alleles are a sample of those in present their parents and chance has a role in determining whether that individual will survive and reproduce. Genetic drift may cause gene variants to disappear completely from a population and thereby reduce genetic variation. This code simulates two simple genetic drift models.

longest-common-motif

Given a text file of sequences in FASTA format, this script will find the longest common sub-string between the sequences

multi-reform

A command-line script for editing genome files.

nf_iq

Nextflow pipeline to test deployment

patterns

A curated collections of Nextflow implementation patterns -- http://nextflow-io.github.io/patterns/index.html

powerpoint_automation

rshiny-tutorial-single-cell-genomics-dashboard

A web app to view and analyze single cell RNAseq data with Seurat

scga

A Nextflow pipeline for the analysis of single cell genomics data

scwgs

A WGS pipeline for validating CRISPR edits in Saccharomyces cerevisiae

sort-fastq-file-by-q-score

Sort illumina paired-end reads in fastq format by their average Q-score.

sudoku-solver

Sudoku solver with tkinter GUI

tutorials

ytscraper