osu-bmbl Goto Github PK

ad-spatial-code

Code for manuscript "Spatially resolved transcriptomics reveals gene signatures underlying the vulnerability of 2 human middle temporal gyrus in Alzheimer's disease"

bmbl-analysis-notebooks

A collection of bioinformatics data analysis notebooks focused on providing examples of current best practices in single-cell analysis.

bmbl-class-notebooks

bmbl-tutorial-sop

bmi8050-2020

bmi8130-notebooks-2021

bobro2

bric

cancerphylogeneticmodel

A phylogenetic model for understanding the effect of-gene duplication on cancer progression

cemig

A new motif prediction algorithm called CEMIG (cis regulatory motif influence using de Bruijn graph)

ceris

Cell-type-specific Regulon Inference from Single-cell RNA-Seq

deepmaps

Single-cell biological network inference using a heterogeneous graph transformer

deepmotif-benchmark

desso

A DL-based framework for sequence and shape motif identification in the human genome

geneqc

Gene expression level Quality Control

gost

idam

Inference of disease-associated microbial gene modules based on metagenomic and metatranscriptomic data

iom

iris

A Shiny web server for interactive visualization and analysis of RNA-seq data

iris3

IRIS3: Integrated Cell-type-specific Regulon Inference Server from Single-cell RNA-Seq (https://bmbl.bmi.osumc.edu/iris3/)

irisfgm

Development repository for the IRISFGM package for submission purposes

marsgt

Multi-omics data analysis for rare population inference using single-cell graph transformer

mega

a deep learning-based python package for identifying cancer-associated intratumoral microbes.

metaqubic

A biclustering-based package for metagenomic and metatranscriptomic data

micah

notch1-cardiac-lineage-scrnaseq

Impaired Human Cardiac Cell Development due to NOTCH1 Deficiency

pgrp-grape-grafting

Adapting Perennial Crops for Climate Change: Graft Transmissible Effects of Rootstocks on Grapevine Shoots

promotepredictor

A sigma-54 promoter predictor in prokaryotic genomes based on a machine learning method

qubic

A qualitative biclustering algorithm for analyses of gene expression data

qubic-r-package

QUBIC R Package