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abritamr

A pipeline for running AMRfinderPlus and collating results into functional classes

amr

AMRFinderPlus - Identify AMR genes and point mutations, and virulence and stress resistance genes in assembled bacterial nucleotide and protein sequence.

bacphlip

A python library for predicting phage lifestyle based on genome sequence

bandage

a Bioinformatics Application for Navigating De novo Assembly Graphs Easily

bioinformatics-training

This is only for bioinformatics training materials.

checkv

javascript idiomatic validator

clinker

Gene cluster comparison figure generator

dorado

Oxford Nanopore's Basecaller

github-fork-tutorial

inherit

introduction_to_conda

This is only for conda training materials.

mini_project

This contains our bioinformatics mini-project data analysis results

mlst

:id: Scan contig files against PubMLST typing schemes

my-repo-1

This repo contains my bioinformatics training materials

my-repo-2

This is only for bioinformatics training materials.

only-alkanes

This is for an assignment

orfipy

Fast and flexible ORF finder

phacts

A simple program to classify the lifestyle of phages.

prokka

:zap: :aquarius: Rapid prokaryotic genome annotation

shovill

⚡♠️ Assemble bacterial isolate genomes from Illumina paired-end reads

spoon-knife

This repo is for demonstration purposes only.

trimmomatic

viralverify

viralVerify: viral contig verification tool

wgs-data-analysis

This is only for bioinformatics training materials.

wgs_data_analysis

working_with_git

Learning to use Git on the command line