outpace-bio Goto Github PK

aws-parallelcluster-serverless-batch-api

boda2

Computational Optimization of DNA Activity (CODA)

calamari

Some help with our cephalopod friends

dalphaball

A tool for computing the surface area and volume of unions of many balls.

denoising-diffusion-pytorch

Implementation of Denoising Diffusion Probabilistic Model in Pytorch

dnabert_2

The official implementation of DNABERT-2.

dnassembly

Streamlined DNA assembly in Python

esm

Evolutionary Scale Modeling (esm): Pretrained language models for proteins

genie

De Novo Protein Design by Equivariantly Diffusing Oriented Residue Clouds

ggnn_meets_plm

inventory-management-web-server

jupyter-hub-server

https://avishayil.medium.com/serverless-jupyter-hub-with-aws-fargate-and-cdk-2160154187a1

masif_seed

Masif seed paper repository

octopus3

A method for next-day high-throughput full plasmid sequencing from colonies

pippack

Implementation of Protein Invariant Point Packer (PIPPack)

plasmidwebapp

Web Application for MoClo Plasmid Assembly and Inventory Management

protein_generator

Joint sequence and structure generation with RoseTTAFold sequence space diffusion

puffin

deep learning-inspired explainable sequence model for transcription initiation

quetz

The Open-Source Server for Conda Packages

rfdesign

Protein hallucination and inpainting with RoseTTAFold

rfdiffusion

Code for running RFdiffusion

rosettafold-all-atom

se3_diffusion

Implementation for SE(3) diffusion model with application to protein backbone generation

torchdrug

A powerful and flexible machine learning platform for drug discovery