Comments (7)
It happens to me as well. I believe it just happened in the last two days, previously it worked pretty well.
from making-it-rain.
Just found if run the commands in split cells, it just works. An error I noticed, for the pybel installation, there is an incompatible error. nevertheless, I can go until equilibration simulation as normal, haven't run the rest yet.
from making-it-rain.
I am also facing the same issue. My simulation was running fine and suddenly it stoped and from that time I am facing the same issue. Please help to reseolve the issue SyntaxError: import * only allowed at module level
from making-it-rain.
I am also facing the same issue. My simulation was running fine and suddenly it stoped and from that time I am facing the same issue. Please help to reseolve the issue SyntaxError: import * only allowed at module level
same problem here mate!
from making-it-rain.
Hi All,
Sorry for my delay. I'm fixing the issue, as soon as it's ready I'll let you know.
Thank you for letting me know about the issue.
Pablo
from making-it-rain.
Hi All,
I have fixed all the issues in the notebooks. Please, try to use again and let me know if everything is working fine.
Thank you.
Best,
Pablo
from making-it-rain.
Hi Pablo,
It works for me; thanks for your effort to keep this running.
from making-it-rain.
Related Issues (20)
- Loading the necessary input files HOT 5
- RuntimeError: Failed to setup action.
- Parameters to generate the topology: HOT 2
- Interaction Energy HOT 3
- Topology HOT 6
- MM-PBSA method to calculate the binding free energy+Interaction Energy HOT 3
- Install dependencies: ModuleNotFoundError: No module named 'openmm' HOT 9
- An issue report in MM-PBSA method to calculate the binding free energy HOT 2
- Interaction energy HOT 2
- Concatenate and align the trajectory Error HOT 1
- AlphaFold2+MD.ipynb CalledProcessError in Install Dependencies pip install -q "jax[cuda11_cudnn805]>=0.3.8,<0.4" HOT 3
- Ligand protein interaction can't run HOT 2
- GPU Acceleration HOT 1
- Incorrect conversion of some ligands HOT 1
- Issue with histidine residues HOT 2
- Is it possible to simulate one protein and two ligands simultaneously? HOT 4
- protein_ligand topology builder (vol is not defined) HOT 1
- install dependencies can't work HOT 9
- Is it possible to run a binding energy decomposation(per residue) for a protein(peptide)-protein(receptor) system, using amber here on Colab? HOT 1
- Error on "Parameters to generate the molecule topology on GAFF2 force field:" HOT 1
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