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af_cluster

Predict multiple protein conformations using sequence clustering and AlphaFold2.

alphafoldv2.2.0

Open source code for AlphaFold.

amygnn

bioen

BioEn - Bayesian Inference Of ENsembles

cdpal

This software is used to analyze protein thermal and chemical stability data monitored by CD or fluorescence spectroscopy.

chem101.6

chroma

A generative model for programmable protein design

colabfold

Making Protein folding accessible to all!

diffnets

Self-supervised neural nets to understand protein mutations

dospt

Repository for the DoSPT code

elvim

ELViM is a method for visualizing the energy landscapes of biomolecules simulations.

encodermap

python library for dimensionality reduction

esm

frustraevo

getcontacts_analysis

Analysis tool for GetContact Frequencies

gms_natcomms_1705932980_data

Data sharing for High-throughput Prediction of Changes in Protein Conformational Distributions with Subsampled AlphaFold2

hyres_gpu

idpconformergenerator

Build conformational representations of Intrinsically Disordered Proteins and Regions by a guided sampling of the protein torsion space

kinetics

Python package for modelling enzyme reactions using Monte carlo sampling from parameter distributions

lassi

LASSI - Lattice Simulation Engine For Stickers And Spacer Interactions

mdigest

path

Prediction of Amyloidogenicity by THreading

pensa

PENSA - a collection of python methods for exploratory analysis and comparison of biomolecular conformational ensembles.

protpardelle

Diffusion-based all-atom protein generative model.

rosettafold-all-atom

sdmd

Discontinuous Molecular Dynamics (DMD) Simulation Package

soursop

soursop is an analysis suite for all-atom simulations of disordered proteins. NOTE soursop used to be called camparitraj...

wedap

Weighted Ensemble Data Analysis and Plotting